Package: BoSSA 3.7

BoSSA: A Bunch of Structure and Sequence Analysis

Reads and plots phylogenetic placements.

Authors:Pierre Lefeuvre

BoSSA_3.7.tar.gz
BoSSA_3.7.zip(r-4.5)BoSSA_3.7.zip(r-4.4)BoSSA_3.7.zip(r-4.3)
BoSSA_3.7.tgz(r-4.4-any)BoSSA_3.7.tgz(r-4.3-any)
BoSSA_3.7.tar.gz(r-4.5-noble)BoSSA_3.7.tar.gz(r-4.4-noble)
BoSSA_3.7.tgz(r-4.4-emscripten)BoSSA_3.7.tgz(r-4.3-emscripten)
BoSSA.pdf |BoSSA.html✨
BoSSA/json (API)

# Install 'BoSSA' in R:
install.packages('BoSSA', repos = c('https://lefeup.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • pplace - A placement object as obtained with the read_sqlite function

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.35 score 15 scripts 352 downloads 5 mentions 15 exports 30 dependencies

Last updated 4 years agofrom:4610ba845c. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 13 2024
R-4.5-winOKNov 13 2024
R-4.5-linuxOKNov 13 2024
R-4.4-winOKNov 13 2024
R-4.4-macOKNov 13 2024
R-4.3-winOKNov 13 2024
R-4.3-macOKNov 13 2024

Exports:circular_treeplot.jplaceplot.pplacepplace_to_matrixpplace_to_tablepplace_to_taxonomyprint.jplaceprint.pplaceprint.protdbread_jplaceread_protdbread_sqliterefpkgsub_pplacewrite_jplace

Dependencies:apebitbit64blobcachemclicpp11DBIdigestfastmapfastmatchgenericsglueigraphjsonlitelatticelifecyclemagrittrMatrixmemoisenlmephangornpkgconfigplogrplotrixquadprogRcpprlangRSQLitevctrs

Example of placement analysis using BoSSA

Rendered frombossa-analysis.Rmdusingknitr::rmarkdownon Nov 13 2024.

Last update: 2020-10-20
Started: 2017-05-09

Circular tree plot

Rendered frombossa-tree.Rmdusingknitr::rmarkdownon Nov 13 2024.

Last update: 2018-09-25
Started: 2018-06-25

Reference package construction from scratch

Rendered frombossa-refpkg.Rmdusingknitr::rmarkdownon Nov 13 2024.

Last update: 2020-10-20
Started: 2017-05-09