Package: BoSSA 3.7

BoSSA: A Bunch of Structure and Sequence Analysis

Reads and plots phylogenetic placements.

Authors:Pierre Lefeuvre

BoSSA_3.7.tar.gz
BoSSA_3.7.zip(r-4.7)BoSSA_3.7.zip(r-4.6)BoSSA_3.7.zip(r-4.5)
BoSSA_3.7.tgz(r-4.6-any)BoSSA_3.7.tgz(r-4.5-any)
BoSSA_3.7.tar.gz(r-4.7-any)BoSSA_3.7.tar.gz(r-4.6-any)
BoSSA_3.7.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
BoSSA/json (API)

# Install 'BoSSA' in R:
install.packages('BoSSA', repos = c('https://lefeup.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • pplace - A placement object as obtained with the read_sqlite function

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.38 score 16 scripts 288 downloads 5 mentions 15 exports 29 dependencies

Last updated from:4610ba845c. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK175
source / vignettesOK196
linux-release-x86_64OK136
macos-release-arm64OK157
macos-oldrel-arm64OK205
windows-develOK108
windows-releaseOK108
windows-oldrelOK110
wasm-releaseOK138

Exports:circular_treeplot.jplaceplot.pplacepplace_to_matrixpplace_to_tablepplace_to_taxonomyprint.jplaceprint.pplaceprint.protdbread_jplaceread_protdbread_sqliterefpkgsub_pplacewrite_jplace

Dependencies:apebitbit64blobcachemclicpp11DBIdigestfastmapfastmatchgenericsglueigraphjsonlitelatticelifecyclemagrittrMatrixmemoisenlmephangornpkgconfigplotrixquadprogRcpprlangRSQLitevctrs

Example of placement analysis using BoSSA

Rendered frombossa-analysis.Rmdusingknitr::rmarkdownon May 16 2026.

Last update: 2020-10-20
Started: 2017-05-09

Circular tree plot

Rendered frombossa-tree.Rmdusingknitr::rmarkdownon May 16 2026.

Last update: 2018-09-25
Started: 2018-06-25

Reference package construction from scratch

Rendered frombossa-refpkg.Rmdusingknitr::rmarkdownon May 16 2026.

Last update: 2020-10-20
Started: 2017-05-09